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SRX3402357: Metagenome of Guaymas Basin sediment, site 4484, depth 0-1 cm
1 ILLUMINA (Illumina HiSeq 2500) run: 205.9M spots, 51.8G bases, 18.3Gb downloads

Design: 10 g of sediment was extracted using the MoBio PowerMax soil kit. Illumina library preparation and sequencing was performed by the GSAF (Genome Sequencing and Analysis Facility) at the University of Texas at Austin. Sequencing was performed on an Illumina HiSeq 2500 with the following specifications: high throughput run mode, run type paired end, 2 x 125 bp, insert size approximately 360 420 bp and ~ 5% PhiX control spike-in.
Submitted by: The University of Texas at Austin
Study: Guaymas Basin sediment metagenomic assembly
show Abstracthide Abstract
Deep-sea hydrothermal vents are hotspots for productivity and biodiversity. Thermal pyrolysis and circulation produce fluids rich in hydrocarbons and reduced compounds that stimulate microbial activity in surrounding sediments. Studies have characterized the diversity of Guaymas Basin (Gulf of California) sediment-inhabiting microorganisms, and many taxa were distinct from those whose physiologies have been described. Here, we resolved the metabolic potential and community-level interactions of these diverse communities. Therefore, we performed metagenomic sequencing of Guaymas Basin sediment samples and further reconstructed microbial genomes from the generated sequencing data.
Sample: Metagenome from Guaymas Basin sediment dive 4484 depth 0-1cm
SAMN06251742 • SRS2696341 • All experiments • All runs
Library:
Name: 4484_0_1cm
Instrument: Illumina HiSeq 2500
Strategy: WGS
Source: METAGENOMIC
Selection: size fractionation
Layout: PAIRED
Runs: 1 run, 205.9M spots, 51.8G bases, 18.3Gb
Run# of Spots# of BasesSizePublished
SRR6301445205,866,01151.8G18.3Gb2017-11-17

ID:
4742236

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